PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200748
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 164aa    MW: 18307.1 Da    PI: 9.554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.98.6e-2895153259
                    --SS-EEEEEEE--TT-SS-EEEEEE.-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrC.tsagCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YYrC t +gCp++k+v+r+ +dp ++++tY  eH+h 
  MDP0000200748  95 TDEYSWRKYGQKPIKGSPYPRGYYRCiTVKGCPARKQVDRAPNDPMTLIVTYYWEHRHA 153
                    69************************5556****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-55892IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.5E-3083153IPR003657WRKY domain
PROSITE profilePS5081128.55289155IPR003657WRKY domain
SuperFamilySSF1182906.41E-2592153IPR003657WRKY domain
SMARTSM007743.0E-3194154IPR003657WRKY domain
PfamPF031062.1E-2496152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MFIRVIIDDI TKLLQSPTPI GMAFTDLQGI DSTELALSLM SSAMSPLSTL PGELPGTGSA  60
SGSGKYHCSN SNRRKKQVKT IRVPVIGSKI NDIPTDEYSW RKYGQKPIKG SPYPRGYYRC  120
ITVKGCPARK QVDRAPNDPM TLIVTYYWEH RHAPENMELV CETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1882152271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367967.16e-72PREDICTED: TMV resistance protein N-like isoform X2
RefseqXP_009367966.12e-71PREDICTED: uncharacterized protein LOC103957516 isoform X1
RefseqXP_009367965.12e-71PREDICTED: uncharacterized protein LOC103957516 isoform X1
SwissprotQ9SJA82e-41WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLW9SY364e-46W9SY36_9R
STRINGPOPTR_0018s03450.16e-42(Populus trichocarpa)
STRINGGLYMA06G08120.14e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3812122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-41WRKY DNA-binding protein 11